GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004865-TA|BGIBMGA004865-PA|IPR011038|Calycin-like,
IPR000566|Lipocalin-related protein and Bos/Can/Equ allergen,
IPR002345|Lipocalin
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   4.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   4.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 81  NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 111
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 81  NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 111
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 60  AEYKLEEISRDGSVQVLATDYNNYAIAY 87
           +E + EEI ++ S  +    YN  A+A+
Sbjct: 90  SETRFEEIKKEVSSYIKKIGYNPAAVAF 117


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 60  AEYKLEEISRDGSVQVLATDYNNYAIAY 87
           +E + EEI ++ S  +    YN  A+A+
Sbjct: 106 SETRFEEIKKEVSSYIKKIGYNPAAVAF 133


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 60  AEYKLEEISRDGSVQVLATDYNNYAIAY 87
           +E + EEI ++ S  +    YN  A+A+
Sbjct: 163 SETRFEEIKKEVSSYIKKIGYNPAAVAF 190


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 60  AEYKLEEISRDGSVQVLATDYNNYAIAY 87
           +E + EEI ++ S  +    YN  ++A+
Sbjct: 163 SEARFEEIKKEVSSYIKKIGYNTASVAF 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,215
Number of Sequences: 429
Number of extensions: 1940
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)