GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004864-TA|BGIBMGA004864-PA|undefined
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 8   LVLAACLGSKAEYRNDGVFEKLSF 31
           L + AC+G K E R  G  +++ F
Sbjct: 120 LKVIACIGEKLEEREAGKTDEVVF 143


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 105 YFQLSDMFNKIEDTLNRNNIDSSVCMQR-LACSYVQLANENMITGN 149
           Y+QL+D++ KI+  +   ++   +  +    C+  +  N + + GN
Sbjct: 284 YYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGN 329


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 170 LEGTSLYEAVEA 181
           ++GT+LYEAV A
Sbjct: 397 MDGTALYEAVAA 408


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,872
Number of Sequences: 429
Number of extensions: 2081
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)