GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004863-TA|BGIBMGA004863-PA|undefined
         (237 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.7  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   7.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 183 FDLAPRKRRMCIHVETQYIPADAGIVDAPKL 213
           F++  R    C     +YIP + G++    L
Sbjct: 449 FNMVTRDSVWCWDTRKEYIPQNLGVIGTSNL 479


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 128 CAYMDVYCNDL 138
           C Y+DVY N L
Sbjct: 4   CLYLDVYTNSL 14


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 41 LEPKPALKVQRKGDVFT 57
          L+P+P+ ++ + GD +T
Sbjct: 31 LQPRPSFELSKNGDEWT 47


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 41 LEPKPALKVQRKGDVFT 57
          L+P+P+ ++ + GD +T
Sbjct: 33 LQPRPSFELSKNGDEWT 49


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 125 ICKCAYMDVYCNDLT 139
           +C  +YM V C+D+T
Sbjct: 11  LCIVSYMMVRCDDIT 25


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,205
Number of Sequences: 429
Number of extensions: 2166
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 140,377
effective HSP length: 56
effective length of query: 181
effective length of database: 116,353
effective search space: 21059893
effective search space used: 21059893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)