GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004860-TA|BGIBMGA004860-PA|undefined
         (123 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   9.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   9.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   9.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   9.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 51  LNNEFSLRKQNEGSQISSTQTEPVLES 77
           +N E  ++ +N+G+ +   + + V +S
Sbjct: 277 VNTESLMKSENQGNDVQYERVQDVFDS 303


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 27 DRSNTPTKDKKQEPKSQDTSGGKVLNNEFSLRKQN 61
          + S   ++D+K+  KS++      L+N ++    N
Sbjct: 61 ETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNN 95


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 27 DRSNTPTKDKKQEPKSQDTSGGKVLNNEFSLRKQN 61
          + S   ++D+K+  KS++      L+N ++    N
Sbjct: 61 ETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNN 95


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 27 DRSNTPTKDKKQEPKSQDTSGGKVLNNEFSLRKQN 61
          + S   ++D+K+  KS++      L+N ++    N
Sbjct: 61 ETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNN 95


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 11 DKSNLIPQSLNQHSPLD 27
          D SN+   S+   SPLD
Sbjct: 33 DNSNMSMSSVGPQSPLD 49


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 11 DKSNLIPQSLNQHSPLD 27
          D SN+   S+   SPLD
Sbjct: 33 DNSNMSMSSVGPQSPLD 49


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 9.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 21  NQHSPLDRSNTPTKDKKQE 39
           N+H PL R N     + +E
Sbjct: 332 NEHQPLQRENMDMVAQNEE 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.301    0.121    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,125
Number of Sequences: 429
Number of extensions: 1581
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 123
length of database: 140,377
effective HSP length: 51
effective length of query: 72
effective length of database: 118,498
effective search space:  8531856
effective search space used:  8531856
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.0 bits)
S2: 39 (19.8 bits)