GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004859-TA|BGIBMGA004859-PA|IPR002220|Dihydrodipicolinate
synthetase
         (258 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.52 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/12 (75%), Positives = 12/12 (100%)

Query: 28  RSTGLHIQVQVG 39
           RSTGLH+Q++VG
Sbjct: 509 RSTGLHLQIRVG 520


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 186 VQNKDVETARALQHKLCLAIESLTKEGPWVPVMKAGME 223
           V + DVE+ + ++  L +  +S+ K   WV   KA  E
Sbjct: 171 VSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEE 208


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 186 VQNKDVETARALQHKLCLAIESLTKEGPWVPVMKAGME 223
           V + DVE+ + ++  L +  +S+ K   WV   KA  E
Sbjct: 139 VSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEE 176


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 1   VGGTTGEHMSLNVADRKKVIEEWVKAG 27
           +GGTT  H        +K  E WV+ G
Sbjct: 150 LGGTTLHHGMAYHRGHRKDYERWVQQG 176


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,037
Number of Sequences: 429
Number of extensions: 2444
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 258
length of database: 140,377
effective HSP length: 56
effective length of query: 202
effective length of database: 116,353
effective search space: 23503306
effective search space used: 23503306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)