GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004857-TA|BGIBMGA004857-PA|IPR001114|Adenylosuccinate
synthetase
         (77 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   5.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   7.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   9.4  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
          protein protein.
          Length = 166

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 24 LLAVDSDIVCRCQGGNNA 41
          LL    D+  RC GG N+
Sbjct: 30 LLNGKXDLFARCMGGINS 47


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 3/13 (23%)

Query: 48  DGKEFDFHLLPSG 60
           DGK   FHLLP+G
Sbjct: 182 DGK---FHLLPTG 191


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 3/13 (23%)

Query: 48  DGKEFDFHLLPSG 60
           DGK   FHLLP+G
Sbjct: 182 DGK---FHLLPTG 191


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 9   LGAQWGDEG 17
           L  QWG+EG
Sbjct: 249 LNFQWGEEG 257


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 7   VVLGAQWGDEGKGKVVDLLAVDSDIVCRCQGGNNA 41
           V  G  WGD+G  K +  + +         GG++A
Sbjct: 161 VPAGWIWGDQGFLKKLGAVDIAGSGAVHLVGGSSA 195


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 29  SDIVCRCQGGNN 40
           +D++  C GG N
Sbjct: 260 ADLIATCYGGRN 271


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 57  LPSGIINQKCTSVIAKI 73
           L   +IN  C S++A +
Sbjct: 438 LREDVINYNCRSLVASV 454


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 57  LPSGIINQKCTSVIAKI 73
           L   +IN  C S++A +
Sbjct: 406 LREDVINYNCRSLVASV 422


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,918
Number of Sequences: 429
Number of extensions: 745
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 77
length of database: 140,377
effective HSP length: 46
effective length of query: 31
effective length of database: 120,643
effective search space:  3739933
effective search space used:  3739933
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)