GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004854-TA|BGIBMGA004854-PA|undefined
         (103 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.19 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   0.57 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 14/32 (43%), Positives = 15/32 (46%)

Query: 15  TGTCGNAREAPSSPFALARVDASEPGILDSTW 46
           T T   A EAPS P    RVD  +   L  TW
Sbjct: 966 TVTIITAEEAPSGPPTSIRVDDLDQHTLKVTW 997



 Score = 23.8 bits (49), Expect = 0.43
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 18   CGNAREAPSSPFALARVDASEPGILDSTWPCCEPTIFDMGVVT 60
            C   ++AP +P A+  +  S   IL S  P  +P     GV+T
Sbjct: 1173 CQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPN----GVIT 1211


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 0.57
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 66  VVCSACALSLERVATGSIVRERIVRITILSIIS 98
           VVC AC++ ++ +    +  +  + IT L+ ++
Sbjct: 354 VVCDACSMGVKYIPNTEVFNDTKITITGLNAVT 386


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 38  EPGILDSTWPCCEPT--IFDM 56
           + GI+++T P C P   +FD+
Sbjct: 143 DSGIINNTQPMCSPKLHVFDL 163


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 18   CGNAREAPSSPFALARVDASEPGILDSTW-PCCEP 51
            C    + P SP A  +V  S P  L  +W P  EP
Sbjct: 1207 CQTEEDVPGSP-ADIKVVVSSPQALFISWLPPLEP 1240



 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 24   APSSPFALARVDASEPGI 41
            +PSSP    R     PGI
Sbjct: 1484 SPSSPVLSVRTQGQAPGI 1501



 Score = 19.4 bits (38), Expect = 9.3
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 47  PCCEPTIFDMGVVTVRRISVVCSACA 72
           P  EP  F  G+    R   VC   A
Sbjct: 611 PIIEPFTFQEGLSEGMRTRTVCGVAA 636


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 18   CGNAREAPSSPFALARVDASEPGILDSTW-PCCEP 51
            C    + P SP A  +V  S P  L  +W P  EP
Sbjct: 1203 CQTEEDVPGSP-ADIKVVVSSPQALFISWLPPLEP 1236



 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 24   APSSPFALARVDASEPGI 41
            +PSSP    R     PGI
Sbjct: 1480 SPSSPVLSVRTQGQAPGI 1497


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,809
Number of Sequences: 429
Number of extensions: 783
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 140,377
effective HSP length: 49
effective length of query: 54
effective length of database: 119,356
effective search space:  6445224
effective search space used:  6445224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)