GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004853-TA|BGIBMGA004853-PA|undefined
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.2  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 29  NENVASEILDEPDKEEEFDEISPKVFSLKDVNEPLTLETLNNTIYELGVIN 79
           NE+V+ EI      E E +++  +  ++ D N  L +  +   I +   IN
Sbjct: 80  NEHVSREIAKIFLNENEINQLITECSAISDTNVHLKITKIFQCITKFKTIN 130


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 98  ESYYTNSPKERLLLAYAECFRRQFLFHF 125
           E YY   P+  + + +    RR+ L++F
Sbjct: 208 EIYYNCCPEPYIDITFVVIIRRRTLYYF 235


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 16  KSELEPLDPLLEVNENVASEI 36
           K+ L+  +  +E+N+N+A  I
Sbjct: 401 KNTLDSYNGSMEINQNIAQNI 421


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,792
Number of Sequences: 429
Number of extensions: 2317
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)