GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004852-TA|BGIBMGA004852-PA|IPR006895|Zinc finger,
Sec23/Sec24-type, IPR006896|Sec23/Sec24 trunk region,
IPR012990|Sec23/Sec24 beta-sandwich, IPR006900|Sec23/Sec24 helical
region, IPR007123|Gelsolin region
         (730 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   3.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   6.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 184  SKCYVFKGTKDLSAKQIQEQLAIGRVNAPNPQQQRPGAPVPQPPAHRFLQPVKQ 237
            SK  V   ++    +Q Q+Q    +   P  Q Q+P    PQP   +  Q  +Q
Sbjct: 1489 SKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQ 1542


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 461 IFFEVANQASTVPQGGRGCVQFITQYQHSSGQRRVRVTTVARNW-GDAAVSLHH 513
           IF     +A+ VP+G R  ++    Y  S      RV      W  D  ++LHH
Sbjct: 160 IFSRAREEANVVPEGARVPIEIPRDYTASDLDVEHRVA----YWREDIGINLHH 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,088
Number of Sequences: 429
Number of extensions: 10266
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 730
length of database: 140,377
effective HSP length: 63
effective length of query: 667
effective length of database: 113,350
effective search space: 75604450
effective search space used: 75604450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)