GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004850-TA|BGIBMGA004850-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (269 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 15 NKMAEIVEKYNTKCPGVKRLMREAIELAEATE 46
          ++  E+  KY  KC G  +   E +E  E  E
Sbjct: 30 DEFREMTSKYRKKCIGETKTTIEDVEATEYGE 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 74  GGIYHGRILLPKEYPMHPPHIILLTPNGRFEINKKICLSISGHHPETWQPSWSIRTALLA 133
           GGI  G + LP +    P  ++    +G +E+  K  + I  +    W P    +++   
Sbjct: 96  GGI--GVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTI 153

Query: 134 LIAFMP 139
            + + P
Sbjct: 154 DVTYFP 159


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 235 LDQLTEILVALLVGAIGIFIYRRWNA 260
           L Q+  IL +L+    G F++R W +
Sbjct: 286 LSQINGILGSLVAITGGCFLFRAWES 311


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,703
Number of Sequences: 429
Number of extensions: 2716
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 269
length of database: 140,377
effective HSP length: 57
effective length of query: 212
effective length of database: 115,924
effective search space: 24575888
effective search space used: 24575888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)