GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004849-TA|BGIBMGA004849-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
         (522 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 450 MRLLALNQQCSELPHLVQDSSGPRVMT 476
           MR+L    +C  +  L+ ++SGP V++
Sbjct: 164 MRILKTKNECDHVQFLITNTSGPGVVS 190


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 450 MRLLALNQQCSELPHLVQDSSGPRVMT 476
           MR+L    +C  +  L+ ++SGP V++
Sbjct: 164 MRILKTKNECDHVQFLITNTSGPGVVS 190


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 274 DGNDAEVISALQIHPQ 289
           DGN+AEV   L + PQ
Sbjct: 386 DGNEAEVEGTLSVQPQ 401


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 34  DAMAKSLYCGMKPIASW 50
           D +++ LYCG++   SW
Sbjct: 680 DRLSRDLYCGIRAGLSW 696


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 34  DAMAKSLYCGMKPIASW 50
           D +++ LYCG++   SW
Sbjct: 718 DRLSRDLYCGIRAGLSW 734


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,109
Number of Sequences: 429
Number of extensions: 5973
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 522
length of database: 140,377
effective HSP length: 61
effective length of query: 461
effective length of database: 114,208
effective search space: 52649888
effective search space used: 52649888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)