GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004848-TA|BGIBMGA004848-PA|IPR012476|GLE1-like
         (674 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   3.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   3.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   4.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   4.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   6.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   6.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 495 NFHKQCPYLVPMFMPQKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMS 544
           + H Q  ++ P+F  QK+ + D E  L     +N++ +    DK  K  S
Sbjct: 5   HIHYQHYHITPVFTKQKKVKEDTELNLQT--IFNEDKLDNLMDKQFKNKS 52


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 251 VISNISAIMELCKNASVTDKEVKQAEIL 278
           ++ +I+  ++ C NA +   +VK   IL
Sbjct: 160 ILKSITCALQFCHNAGIVHADVKPKNIL 187


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 123 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQ 182
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI  +   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKI--ISSL 85

Query: 183 NNSAMINRQTIDNMN 197
           +N  + N    +N N
Sbjct: 86  SNKTIHNNNNYNNNN 100


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 123 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQ 182
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI  +   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKI--ISSL 85

Query: 183 NNSAMINRQTIDNMN 197
           +N  + N    +N N
Sbjct: 86  SNKTIHNNNNYNNNN 100


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 551 CAIWIMSTPKFINIPN 566
           C IWI ST K +  P+
Sbjct: 77  CVIWIFSTSKSLRTPS 92


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 58 VKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL 91
          +K   I P     K L+ E K  P K+ PL  DL
Sbjct: 32 MKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDL 65


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 551 CAIWIMSTPKFINIPN 566
           C IWI ST K +  P+
Sbjct: 77  CVIWIFSTSKSLRTPS 92


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,749
Number of Sequences: 429
Number of extensions: 7898
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 674
length of database: 140,377
effective HSP length: 62
effective length of query: 612
effective length of database: 113,779
effective search space: 69632748
effective search space used: 69632748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)