GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004847-TA|BGIBMGA004847-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR002016|Haem peroxidase, plant/fungal/bacterial
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.16 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.28 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   1.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   1.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 110 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 160
           W P EYG +        +I    I+ Y+   GN++V  +T A       +SW P
Sbjct: 97  WNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKP 150


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 101 HESSVNSVAWAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSIS 157
           HE   +   W PAEYG +         I    I+ Y+   G + V  +T A       + 
Sbjct: 75  HEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVL 134

Query: 158 WCP 160
           W P
Sbjct: 135 WTP 137


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 110 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 160
           W P EYG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQP 145


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 14  DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 53
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 14  DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 53
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 94  KLYEYTGHESSVNSVAWA 111
           K+Y ++GHES++ SV  A
Sbjct: 250 KIYLFSGHESNIASVLHA 267


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 94  KLYEYTGHESSVNSVAWA 111
           K+Y ++GHES++ SV  A
Sbjct: 265 KIYLFSGHESNIASVLHA 282


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 162 LSADLNLDPLTNKDAPKRLVTGGCDNLIKIWREQGDQWVEENR 204
           LS   +L+    KD P+         L+K WR+  D + EEN+
Sbjct: 254 LSLHASLNHTLTKDQPETY------ELVKEWRDFVDNYAEENK 290


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 110 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 160
           W P +YG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 84  WNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKP 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,769
Number of Sequences: 429
Number of extensions: 4675
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)