GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004846-TA|BGIBMGA004846-PA|IPR001806|Ras GTPase,
IPR005225|Small GTP-binding protein domain, IPR013753|Ras,
IPR002078|Sigma-54 factor, interaction region,
IPR006688|ADP-ribosylation factor, IPR003577|Ras small GTPase, Ras
type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR002041|GTP-binding nuclear protein Ran
         (225 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    25   0.76 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.4  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 87  VYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGE-QLAIEYQI 145
           +Y +     F+N +   +  EE     V+   + + C LD  + +  ++GE Q  IE + 
Sbjct: 49  LYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEKQTTIEREF 108

Query: 146 KFVETSA 152
              E  A
Sbjct: 109 SSTEMKA 115


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 97  ENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKER 135
           E ++NW         A+  ++I G      + + ++KE+
Sbjct: 185 EKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEK 223


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 20  GKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFRTITTAYYR 79
           G+  I++  S+D+F+    +T   D K   + +DG+    Q  D         +T   Y 
Sbjct: 210 GEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQ--DGISGMALSPMTNNLYY 267

Query: 80  GSMGIMLVYDVTNEK 94
             +    +Y V  E+
Sbjct: 268 SPVASTSLYYVNTEQ 282


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 20  GKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFRTITTAYYR 79
           G+  I++  S+D+F+    +T   D K   + +DG+    Q  D         +T   Y 
Sbjct: 210 GEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQ--DGISGMALSPMTNNLYY 267

Query: 80  GSMGIMLVYDVTNEK 94
             +    +Y V  E+
Sbjct: 268 SPVASTSLYYVNTEQ 282


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 20  GKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFRTITTAYYR 79
           G+  I++  S+D+F+    +T   D K   + +DG+    Q  D         +T   Y 
Sbjct: 210 GEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQ--DGISGMALSPMTNNLYY 267

Query: 80  GSMGIMLVYDVTNEK 94
             +    +Y V  E+
Sbjct: 268 SPVASTSLYYVNTEQ 282


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 144 QIKFVETSAKDSLNVEYAFYTLARDIKAKMEKKQGSDTI 182
           ++K++E    ++L +      +AR+IK  ++   G  TI
Sbjct: 396 EMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTI 434


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 182 IMPTSGAKQICVPVREVLVLMRYNRE 207
           ++PT   K +   V+E+ VLM  NR+
Sbjct: 68  MLPTGFRKVLVHNVKELEVLMMQNRK 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,479
Number of Sequences: 429
Number of extensions: 2311
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 225
length of database: 140,377
effective HSP length: 55
effective length of query: 170
effective length of database: 116,782
effective search space: 19852940
effective search space used: 19852940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)