GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004845-TA|BGIBMGA004845-PA|IPR001609|Myosin head, motor
region, IPR000299|Band 4.1, IPR000048|IQ calmodulin-binding region,
IPR000857|Unconventional myosin/plant kinesin-like protein/non-motor
protein conserved region MyTH4
         (2179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   1.7  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   9.0  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    25   9.0  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    25   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 718 EMKRVNQEIKLREERNSLQEKQEQERAELETMADQLRGLSCAATNRAESVNLDNL 772
           E+ R+ +   L + R  LQE   Q  A +E   D L GL+   T  A   +LD+L
Sbjct: 223 EITRLQENSPLLDLRQ-LQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSL 276


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 454 HGFVDKNRDTQQDAFIDHLSRSANPFVREL 483
           HG +DKN +      + HL RS     ++L
Sbjct: 66  HGILDKNAEVDVQKALRHLPRSMQDSTKKL 95


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 394 RSLLKLLSEQCHMPKGSDSAYLTNIQGEFGEHQSFVKGSRRKWEEEFGVQHYAGTVSYSV 453
           R  +K +  + +  K  D+  + NI+    E + +   S        G QH +   S   
Sbjct: 176 REEIKNVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRER 235

Query: 454 HGFVDKNRD-TQQDAFIDHLSRSANPFVRE 482
               D+NR+  ++D   + L      F+ E
Sbjct: 236 SCSRDRNREYRKKDRQYEKLHNEKEKFLEE 265


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 394 RSLLKLLSEQCHMPKGSDSAYLTNIQGEFGEHQSFVKGSRRKWEEEFGVQHYAGTVSYSV 453
           R  +K +  + +  K  D+  + NI+    E + +   S        G QH +   S   
Sbjct: 176 REEIKNVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRER 235

Query: 454 HGFVDKNRD-TQQDAFIDHLSRSANPFVRE 482
               D+NR+  ++D   + L      F+ E
Sbjct: 236 SCSRDRNREYRKKDRQYEKLHNEKEKFLEE 265


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,473
Number of Sequences: 429
Number of extensions: 20652
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 4
length of query: 2179
length of database: 140,377
effective HSP length: 69
effective length of query: 2110
effective length of database: 110,776
effective search space: 233737360
effective search space used: 233737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)