GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004843-TA|BGIBMGA004843-PA|IPR006209|EGF-like,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.17 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   1.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   3.7  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   3.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   6.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    19   8.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    19   8.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.17
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 18  CICAPGYTGDFCESQIESPECDIEECAEGCKGGACDCNP 56
           C C PGY  D  E Q E  EC I +        +C+  P
Sbjct: 247 CHCKPGYQAD-VEKQ-ECTECPIGKFKHEAGSHSCEACP 283


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 48  KGGACDCNPRDTDAVSARFETRLLVMDQPNINISQEIVEQVISAVN 93
           KGGA  C P   +    R E  L  +DQ  IN  ++I+  +   V+
Sbjct: 68  KGGA-SCGPNVYNRGVQRLEAMLFAVDQ--INRDEDILPGITIGVH 110


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 24  YTGDFCESQIESPECDIEECAE 45
           YTGD C+   +  +C  ++  E
Sbjct: 117 YTGDDCQKTYQYVQCHYKQNPE 138


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 42  ECAEGCKGGACDCN 55
           EC E  KG   +CN
Sbjct: 114 ECIENAKGETDECN 127


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 42  ECAEGCKGGACDCN 55
           EC E  KG   +CN
Sbjct: 114 ECIENAKGETDECN 127


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 3   KNGGTCRQMGPAAVSCIC 20
           KN GTC  + P      C
Sbjct: 131 KNNGTCLYVPPGIFKSTC 148


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 44  AEGCKGGACDCNPRDTDAVSARFETRLLV 72
           AEG  G + +C   D D    R   R+L+
Sbjct: 104 AEGIFGSSEECVALDLDGQGGRTFLRVLL 132


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 44  AEGCKGGACDCNPRDTDAVSARFETRLLV 72
           AEG  G + +C   D D    R   R+L+
Sbjct: 72  AEGIFGSSEECVALDLDGQGGRTFLRVLL 100


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,757
Number of Sequences: 429
Number of extensions: 1201
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)