GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004841-TA|BGIBMGA004841-PA|IPR000859|CUB
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   3.2  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.2  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   4.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    24   5.6  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   7.4  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    23   9.7  

>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 48  NPFPVPIKCRWIIEHDIAN-GTISIYFTQQYTTSGLTFTEYMYYDESYK 95
           N +   I+  WI+   +A  G +  +FT+Q   S  + TEY   D+ +K
Sbjct: 539 NAYANAIRMIWIVNCPVAGVGMLLSFFTKQEKLSQ-SVTEYKEKDKGFK 586


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 48  NPFPVPIKCRWIIEHDIAN-GTISIYFTQQYTTSGLTFTEYMYYDESYK 95
           N +   I+  WI+   +A  G +  +FT+Q   S  + TEY   D+ +K
Sbjct: 539 NVYANAIRTIWIVNCPVAGVGMLLSFFTKQEKLSQ-SVTEYKEKDKGFK 586


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 58 WIIEHDIANGTISIYFTQQYTTSGLTFTEYMYY 90
          W +E   + G +S      +  SG +  EYM Y
Sbjct: 29 WYLEKKKSTGDLSTLSAPSFILSGTSLLEYMSY 61


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 47  PNPFPVPIKCRW 58
           P+ F VPIKC W
Sbjct: 115 PHSFEVPIKCPW 126


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 43  TPNFPNPFPVPIKCRWIIEHDIANGTISIYFT 74
           +PN     P P+  R++ EH + NGT S   T
Sbjct: 401 SPNLRFNMPAPLATRFLQEHSL-NGTKSAPIT 431


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 60  IEHDIANGTISIYFTQQYTTSGLTFTEYMYYDESYKLG 97
           +E D     +S++F +QY      F +Y   D  ++LG
Sbjct: 176 LEFDTCQELLSLFFLKQYHNFMFVFRDYFIRD--FELG 211


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,204
Number of Sequences: 5004
Number of extensions: 23969
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)