GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004841-TA|BGIBMGA004841-PA|IPR000859|CUB
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   1.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   2.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   2.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   2.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   2.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   2.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   6.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   6.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    20   8.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    20   8.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    20   8.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    20   8.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    20   8.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    20   8.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    20   8.8  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    20   8.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   8.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   8.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   8.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   8.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   8.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVPI C
Sbjct: 336 IINIEQIPVPVPVPIHC 352


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVPI C
Sbjct: 327 IINIEQIPVPVPVPIYC 343


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVPI C
Sbjct: 338 IINIEQIPVPVPVPIYC 354


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVPI C
Sbjct: 356 IINIEQIPVPVPVPIYC 372


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVPI C
Sbjct: 358 IINIEQIPVPVPVPIYC 374


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVP+ C
Sbjct: 116 IINIEQIPVPVPVPVYC 132


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  VIQTPNFPNPFPVPIKC 56
           +I     P P PVP+ C
Sbjct: 116 IINIEQIPVPVPVPVYC 132


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 118 PVPIPVPIYC 127


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 93  SYKLGERRALTVTEDSITRVKWLQ 116
           SY++ ER  + V    I +  WL+
Sbjct: 573 SYRVKERGEIEVKGKGIMKTYWLE 596


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 122 PIPVPVPIYC 131


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 122 PIPVPVPIYC 131


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 122 PIPVPVPIYC 131


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 122 PIPVPVPIYC 131


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 117 PVPVPVPIYC 126


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 117 PVPVPVPIYC 126


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PIPVPVPIYC 129


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 120 PVPVPVPIYC 129


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 123 PVPVPVPIYC 132


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 128 PVPVPVPIYC 137


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 337 PIPVPVPIYC 346


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 355 PVPVPVPIYC 364


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 47  PNPFPVPIKC 56
           P P PVPI C
Sbjct: 362 PVPVPVPIYC 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,169
Number of Sequences: 429
Number of extensions: 2067
Number of successful extensions: 28
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)