GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004839-TA|BGIBMGA004839-PA|undefined
         (200 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   3.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   3.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 161 IMPDLQLLPYTISGPVATPPIKDY 184
           + P+L+LL Y I  PV      DY
Sbjct: 155 VNPELKLLQYDIGKPVVAEETVDY 178


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 113 RELLQKEWARYKRDEYMNNIA 133
           ++L+Q  WA  ++DE  + IA
Sbjct: 29  KKLVQNTWAVVRKDEVASGIA 49


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 113 RELLQKEWARYKRDEYMNNIA 133
           ++L+Q  WA  ++DE  + IA
Sbjct: 29  KKLVQNTWAVVRKDEVASGIA 49


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 174 GPVATPPIKDYESPD-GEYIDVSK 196
           GPVAT  +K Y   D  E ID  K
Sbjct: 302 GPVATKAMKGYSDEDLREAIDEFK 325


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 182 KDYESPDGEYIDVSKK 197
           K YE PDG+ I +  +
Sbjct: 13  KSYELPDGQVITIGNE 28


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,979
Number of Sequences: 429
Number of extensions: 1829
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 200
length of database: 140,377
effective HSP length: 55
effective length of query: 145
effective length of database: 116,782
effective search space: 16933390
effective search space used: 16933390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)