GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004832-TA|BGIBMGA004832-PA|undefined
         (1415 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   4.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 4   YLPWSESIKKRACRYLLQRYLGNFLEQKLTLDQLSVDL 41
           Y      +++R   Y   RY G F +++L L +LS  L
Sbjct: 401 YRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKL 438


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 4   YLPWSESIKKRACRYLLQRYLGNFLEQKLTLDQLSVDL 41
           Y      +++R   Y   RY G F +++L L +LS  L
Sbjct: 369 YRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKL 406


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 816 ESKQLYEIIYNRINSDLLLWEPHVTSEEEFNKLACGPINPAFGTCK 861
           +SK+ +E   N +N +L      VT +    ++   PI  A   CK
Sbjct: 44  KSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIKTALSVCK 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,973
Number of Sequences: 429
Number of extensions: 17536
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 1415
length of database: 140,377
effective HSP length: 66
effective length of query: 1349
effective length of database: 112,063
effective search space: 151172987
effective search space used: 151172987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)