GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004831-TA|BGIBMGA004831-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (51 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    18   8.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   8.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 24 GAILFYLTIYACNGNTSE 41
          G+I+F ++ + C G   E
Sbjct: 59 GSIIFVISFFGCCGAIRE 76


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 14  GATVFLPADSGAILFYLTIYACNGNTSEKDIPAK 47
           G T+FL A      F  TIY        K + +K
Sbjct: 300 GCTIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSK 333


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 16  TVFLPADSG 24
           T +LP+DSG
Sbjct: 265 TFYLPSDSG 273


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 16  TVFLPADSG 24
           T +LP+DSG
Sbjct: 265 TFYLPSDSG 273


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 27  LFYLTIYACNGN 38
           + YLT Y+ NG+
Sbjct: 808 ILYLTWYSSNGD 819


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035
Number of Sequences: 429
Number of extensions: 427
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 51
length of database: 140,377
effective HSP length: 31
effective length of query: 20
effective length of database: 127,078
effective search space:  2541560
effective search space used:  2541560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)