GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004827-TA|BGIBMGA004827-PA|undefined
         (270 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   1.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   1.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   1.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   1.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.8  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 49  SKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           S+  K+    + N       Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 298 SREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCGNFPPRPMGPW 353


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 49  SKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           S+  K+    + N       Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 309 SREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCGNFPPRPMGPW 364


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 49  SKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           S+  K+    + N       Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 309 SREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCGNFPPRPMGPW 364


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 49  SKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           S+  K+    + N       Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 298 SREPKIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCGNFPPRPMGPW 353


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 160 GKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 218
           G  L+    A  SF + L  NT +     A ++ + ++ +L+NGI    L P+   + Y
Sbjct: 208 GDALIVYQNADDSFHR-LTSNTFDYDPRYAKMTIDGESFTLKNGICGMALSPVTNNLYY 265


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 41  KIRPVSKFSKA-SKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNH--KAPIYLPLWHSSKP 97
           K R  SK  K  S + +++  N+   K LY    +  +   +N+  + PI +P++  + P
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLYCN-NYKKLYYNINYIEQIPIPVPIYCGNFP 129

Query: 98  PLPVKLW 104
           P P+  W
Sbjct: 130 PRPMGPW 136


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 41  KIRPVSKFSKA-SKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNH--KAPIYLPLWHSSKP 97
           K R  SK  K  S + +++  N+   K LY    +  +   +N+  + PI +P++  + P
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLYCN-NYKKLYYNINYIEQIPIPVPIYCGNFP 129

Query: 98  PLPVKLW 104
           P P+  W
Sbjct: 130 PRPMGPW 136


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 41  KIRPVSKFSKA-SKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNH--KAPIYLPLWHSSKP 97
           K R  SK  K  S + +++  N+   K LY    +  +   +N+  + PI +P++  + P
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLYCN-NYRKLYYNINYIEQIPIPVPIYCGNFP 129

Query: 98  PLPVKLW 104
           P P+  W
Sbjct: 130 PRPMGPW 136


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 69  YAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 107 YKKLQYYNINYIEQIPIPVPVPIYCGNFPPRPLGPW 142


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 69  YAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 107 YKKLQYYNINYIEQIPIPVPVPIYCGNFPPRPLGPW 142


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 69  YAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 107 YKKLQYYNINYIEQIPIPVPVPIYCGNFPPRPLGPW 142


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 69  YAGVQHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLW 104
           Y  +Q+  +  +     P+ +P++  + PP P+  W
Sbjct: 107 YKKLQYYNINYIEQIPIPVPVPIYCGNFPPRPLGPW 142


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 86  PIYLPLWHSSKPPLPVKLW 104
           P+ +P+++ + PP P+  W
Sbjct: 339 PVPVPIYYGNFPPRPMGPW 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 159 IGKKLVELGFAKASFPK--ELK-KNTIESQIAPALLSAEAQAKSLRNGIWSEN 208
           IG  L  + F     P   E+K KN    +  PA+L  EAQ +     +W+ N
Sbjct: 761 IGAGLSAVIFISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMN 813


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 25  IAVYALATAGLAISVHKIRPVSK 47
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 25  IAVYALATAGLAISVHKIRPVSK 47
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 160 GKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 218
           G+ L+    +  SF + L  NT +       L+   ++ +++NGI+   L P+   + Y
Sbjct: 213 GEGLIMYQNSDDSFHR-LTSNTFDYDPRYTKLTVAGESFTVKNGIYGIALSPVTNNLYY 270


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,490
Number of Sequences: 429
Number of extensions: 2678
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 18
length of query: 270
length of database: 140,377
effective HSP length: 57
effective length of query: 213
effective length of database: 115,924
effective search space: 24691812
effective search space used: 24691812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)