GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004826-TA|BGIBMGA004826-PA|undefined
         (157 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   5.8  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query: 93  QDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAE 139
           +D++ +     + + L V C    D ++ + +++I    M +KTI +
Sbjct: 85  RDIVQAVLDDNETDQLIVECSPISDANVHIKISKIFQCFMKYKTITD 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 74   EIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTE 126
            E  W L+    K    + + +L  S  +Q+K E  +V      +F+ +    E
Sbjct: 1541 EFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVTLTKE 1593


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 74   EIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTE 126
            E  W L+    K    + + +L  S  +Q+K E  +V      +F+ +    E
Sbjct: 1537 EFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVTLTKE 1589


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 36 TCRVCNHXXXXXXXXXXXXXTERPACLCPTCGTAY 70
          +C+ C               T    C C  CG A+
Sbjct: 18 SCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAF 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,141
Number of Sequences: 429
Number of extensions: 1337
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 140,377
effective HSP length: 53
effective length of query: 104
effective length of database: 117,640
effective search space: 12234560
effective search space used: 12234560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)