GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004824-TA|BGIBMGA004824-PA|IPR012255|Electron transfer
flavoprotein, beta subunit, IPR000049|Electron transfer flavoprotein
beta-subunit
         (253 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MSRVLVGVKRVIDYAVKIRVKPDKS-GVVTDGV-KHSMNPFDEIAVEEAVRMKEKKLASE 58
           +S    G+K   DYA+++R K  +  G  T  V K + +      V E   M+ + +A  
Sbjct: 478 LSATFKGLKPSTDYAIQVRAKTTRGWGEYTPVVYKKTPHAMGLDYVGEDDNMQVRIIAGA 537

Query: 59  VIAV 62
           ++AV
Sbjct: 538 IVAV 541


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 77  LAMGADRAIHVEVAGAEYDTLQPIHVAKILA 107
           + +G+D   ++E+   E D +  IHV   +A
Sbjct: 463 VTVGSDGNANIEIGAGEEDGVLAIHVKAKMA 493


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,044
Number of Sequences: 429
Number of extensions: 1855
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 140,377
effective HSP length: 56
effective length of query: 197
effective length of database: 116,353
effective search space: 22921541
effective search space used: 22921541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)