GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004823-TA|BGIBMGA004823-PA|IPR007180|Protein of unknown
function DUF382, IPR006568|PSP, proline-rich
         (901 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   2.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   8.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   8.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 858 DQRPNTHEDLSDMLADHVARQKNKRKRQQNTDSKHAKK 895
           D + N H + +   A H ++  N+   Q N  + H+ K
Sbjct: 418 DNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 278 ALGSEEDKETDVQKDMEAPPAPVISTEYDVEEDEQSDDENIPD----PPMP 324
           A G+ ED         + PPA   S E++ E +  S    + +    PP P
Sbjct: 255 AAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTP 305


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 376 EKEADIEYVQ--ENIQFHEMEPMYRQFHRILEAFKISEKKEETIK 418
           E +  IE V+  E  +F E E +   F+ +LE F + +KK   I+
Sbjct: 46  ETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIR 90


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 572 DIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLREKKPGDLSEEL 620
           ++ YQ +  A   W T  R  +   +Y    ++  + +E  P   +EEL
Sbjct: 395 NVKYQVVPSALQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTEEL 443


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 572 DIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLREKKPGDLSEEL 620
           ++ YQ +  A   W T  R  +   +Y    ++  + +E  P   +EEL
Sbjct: 21  NVKYQVVPSALQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTEEL 69


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,802
Number of Sequences: 429
Number of extensions: 9209
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 901
length of database: 140,377
effective HSP length: 64
effective length of query: 837
effective length of database: 112,921
effective search space: 94514877
effective search space used: 94514877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)