GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004822-TA|BGIBMGA004822-PA|IPR014014|DEAD-box RNA
helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal,
IPR000629|ATP-dependent helicase, DEAD-box, IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding
         (405 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      226   3e-61
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  226 bits (552), Expect = 3e-61
 Identities = 133/385 (34%), Positives = 223/385 (57%), Gaps = 20/385 (5%)

Query: 19  NVEFDTSED--VEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQA 76
           N++ + S D   + I +F++ GLR+ +L  I   G++KP+ +Q+ ++  I+ GRD++A A
Sbjct: 181 NIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACA 240

Query: 77  QSGTGKTATFSISILQTL---------DTTLRETQVLILSPTRELATQIQKVILALGDFM 127
           Q+G+GKTA F++ I+ TL          +T  E QV+I+SPTREL  QI + I+      
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 128 NVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEML 187
            ++     GGT++     KL  G H++  TPGR+ D + +  ++  S++ LVLDEAD ML
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRML 360

Query: 188 NKGFK---EQIYDVYRYLPPAT-QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLE 243
           + GF    E++ D    +P    Q ++ SAT P E+  +  +F+ + + + V        
Sbjct: 361 DMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACS 420

Query: 244 GIKQFFVAVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWLTQKMQEANFTVS 299
            ++Q F  V R + K D L ++     D+ T+   ++F   K+K D++   + E N+  +
Sbjct: 421 DVEQNFYEVARNKKK-DLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTT 479

Query: 300 SMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 359
           S+HGD  Q++R+  + +F+SG+  +L+ T V ARG+D++ VS VINYDLP   + Y+HRI
Sbjct: 480 SIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI 539

Query: 360 GRSGRFGRKGVAINFVKSDDIRILR 384
           GR+GR G +G A +F   ++   LR
Sbjct: 540 GRTGRVGNRGRATSFFDPEEDAPLR 564


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 76  AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELAT 114
           A+ G G           TLDT LRE Q  +   ++  +T
Sbjct: 55  AEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,533
Number of Sequences: 429
Number of extensions: 4227
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 405
length of database: 140,377
effective HSP length: 59
effective length of query: 346
effective length of database: 115,066
effective search space: 39812836
effective search space used: 39812836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)