GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004819-TA|BGIBMGA004819-PA|IPR002048|Calcium-binding
EF-hand
         (184 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 60  NPLSERIVQSFFAESHDDRVNFLQFMRVLAHFRPIKKNRENKLNCREEKLRFAFSMYDLD 119
           N   E +V   F  SH DR N     R         +N + +  CR   L    S  D D
Sbjct: 231 NHSKEYLVSIMF--SHYDRNNNGNLER--EELEQFAENEDLEELCRGCNLGHMISYDDTD 286

Query: 120 SDGKISRDE 128
            DGK++ +E
Sbjct: 287 GDGKLNVNE 295



 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 105 REEKLRFAFSMYDLDSDGKISRDEL 129
           +E  +   FS YD +++G + R+EL
Sbjct: 234 KEYLVSIMFSHYDRNNNGNLEREEL 258



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 35  FTSLDKNDCGTLSREDFLRIPE 56
           F+  D+N+ G L RE+  +  E
Sbjct: 242 FSHYDRNNNGNLEREELEQFAE 263


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 16  QIQEETGFTPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQS 69
           ++QEE  F P++I +L      L KN   TL     L      ++ L+ R+ QS
Sbjct: 265 KMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLTSRDFLSSLAFRVFQS 318


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 92   RPIKKNRENKLNCREEKLRF 111
            RP+K+++EN+ N   ++ R+
Sbjct: 1646 RPMKESQENQQNAETQRERY 1665


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 92   RPIKKNRENKLNCREEKLRF 111
            RP+K+++EN+ N   ++ R+
Sbjct: 1642 RPMKESQENQQNAETQRERY 1661


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 41  NDCGTLSREDFLRIPELAINPLSERIVQSFFAESHDDRVNFLQFMRVLA 89
           ND G LSR     +P L I  L+   VQ      H +R  F + MR+ A
Sbjct: 488 NDIGNLSRGMLWDLPNLQILNLARNKVQ------HVERYAFERNMRLEA 530


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 107 EKLRFAFSMYDLDSD 121
           EKL +AFS++ ++ D
Sbjct: 347 EKLSYAFSVWRMEDD 361


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,958
Number of Sequences: 429
Number of extensions: 1760
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 184
length of database: 140,377
effective HSP length: 54
effective length of query: 130
effective length of database: 117,211
effective search space: 15237430
effective search space used: 15237430
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)