GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004818-TA|BGIBMGA004818-PA|IPR009057|Homeodomain-like,
IPR006695|CENP-B, N-terminal DNA-binding, IPR011526|Helix-turn-helix,
Psq-like
         (499 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.067
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 0.067
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 13  TPGDKIEAIQRVNDGESKASVAR-DIGVPESTLRGWCKNE 51
           +P D   A++ +  G++    A  + G+P  TL G CK E
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKRE 560


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 352 KGKPEKGTAISPDRPQLREEDTRDTPNEGI 381
           KG P+   +++     +RE+D R  P+  +
Sbjct: 403 KGSPDGFESVTSQYKNIREDDARHIPHASV 432


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 146 VSMSAISPLSGLGHIPGLSHSHLGLSFNEIATNLTLLAQLNP 187
           +S +A+S  SG  HIP +  S    +F++   +++ L  + P
Sbjct: 109 LSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPP 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.126    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,254
Number of Sequences: 429
Number of extensions: 5506
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 499
length of database: 140,377
effective HSP length: 61
effective length of query: 438
effective length of database: 114,208
effective search space: 50023104
effective search space used: 50023104
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)