GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004814-TA|BGIBMGA004814-PA|IPR008985|Concanavalin A-like
lectin/glucanase, IPR013032|EGF-like region, IPR000742|EGF-like, type
3
         (588 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   9.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 217 CKYNDRVTPALFVLNSTDSESVY--SKSIIPFPESGTWYLTFRLFCDSTVCPCPTSEDGT 274
           C Y+ ++   LF  +      V    KS      +GT  +T    C+ T    P     T
Sbjct: 754 CLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALT 813

Query: 275 KYYVNSSGITDVGLSSNKTRQGSSE 299
                S G+T++ L+SN + + ++E
Sbjct: 814 AAVQTSVGVTEISLASNASSKTNNE 838



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 25  IDTSADTYVTLRLQSLSLPSDDNYI 49
           ++  A+  +T+ LQS ++P  D+Y+
Sbjct: 243 LEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 217 CKYNDRVTPALFVLNSTDSESVY--SKSIIPFPESGTWYLTFRLFCDSTVCPCPTSEDGT 274
           C Y+ ++   LF  +      V    KS      +GT  +T    C+ T    P     T
Sbjct: 844 CLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALT 903

Query: 275 KYYVNSSGITDVGLSSNKTRQGSSE 299
                S G+T++ L+SN + + ++E
Sbjct: 904 AAVQTSVGVTEISLASNASSKTNNE 928



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 25  IDTSADTYVTLRLQSLSLPSDDNYI 49
           ++  A+  +T+ LQS ++P  D+Y+
Sbjct: 333 LEEEAEGAITVELQSENIPGFDDYM 357


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 496 TGIMRYPWSYYSKYMPIGIILVSTGLICYAFLQTEQNYKIVHSIWHMIIAFSVVFLLPDV 555
           T + RY  S       +G ILV   +IC   +  +++ K   S+   +++  V    P +
Sbjct: 71  TFLRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL-RSLLSADVAVATPLI 129

Query: 556 KRG 558
             G
Sbjct: 130 SMG 132


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 225 PALFVLNSTDSESVYSKSIIPFPESGTWYLTFRLFCDSTVCPCPTSEDGTKYYVNSSGIT 284
           P    +N  D  +V+     P    G    T+R+ CD+  C             N + IT
Sbjct: 321 PQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVVCDA--CSMGVKYIPNTEVFNDTKIT 378

Query: 285 DVGLSSNKT 293
             GL++  T
Sbjct: 379 ITGLNAVTT 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,062
Number of Sequences: 429
Number of extensions: 7296
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 588
length of database: 140,377
effective HSP length: 61
effective length of query: 527
effective length of database: 114,208
effective search space: 60187616
effective search space used: 60187616
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)