GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004812-TA|BGIBMGA004812-PA|undefined
         (290 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   0.11 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.15 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.15 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.19 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 17/85 (20%), Positives = 36/85 (42%)

Query: 117 LTKDVEDRKKPCQTGKQQLQTEKQLEIERQLLEIQKQLQAEEHXXXXXXXXXXXXXXXAE 176
           L K + D +       ++L   K  E ++Q+   Q+  Q ++                 +
Sbjct: 388 LLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447

Query: 177 NEELQKKNRQLQQEKEWLLAEIAAA 201
            ++ Q++ +Q QQ++ W + E  AA
Sbjct: 448 QQQQQQQQQQQQQQQHWPMEEEPAA 472


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 18/78 (23%), Positives = 30/78 (38%)

Query: 205 VQQINSLFVEPAVCPTETATXXXXXXXXXNVNGLSRAFIHEFDIRLTELEKKMDARDKLL 264
           V  +  L   PA  P +             V GLS   + EF  R   LE +     +L+
Sbjct: 166 VMSVVGLSKAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLV 225

Query: 265 MPTDATVSKPVATAVAPD 282
           +   +T  + +  +V P+
Sbjct: 226 IEEQSTEQERLLLSVLPE 243


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 85   EQVLEHSPDLEDIYAKGLEVSVTAIRGLRSVLLTKDVEDRKKPCQTGKQQLQTEKQLEIE 144
            +Q L H PDL ++YA    V         S L+  D   +K   Q  +QQ Q ++Q + +
Sbjct: 1464 QQQLNHYPDLHNLYA----VPTDKKSACDSKLIV-DHSSQKTQQQQPQQQQQQQQQQQPQ 1518

Query: 145  RQLLEIQKQ 153
            +Q  + Q+Q
Sbjct: 1519 QQSQQPQQQ 1527



 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 121 VEDRKKPCQTGKQQLQTEKQLEIERQL 147
           V+D  +P Q  +QQ Q ++Q + ER+L
Sbjct: 156 VQDHHRPYQQQQQQQQRQQQRQEERRL 182



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 129  QTGKQQLQTEKQLEIERQLLEIQKQLQAEE 158
            Q  +QQ Q ++Q + ++Q  + Q+Q QA E
Sbjct: 1209 QQQQQQQQQQQQQQQQQQQQQQQQQHQARE 1238


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 67  PSEHNDSYAKMASTAFVVEQVLEHSPDLEDIYAKGLEVS 105
           P + + SY  M S  +  E ++E+ PD+E+   K +E+S
Sbjct: 157 PRQSHQSYHHMDSVEYKPE-IMEYKPDVEEQRYKQVEIS 194


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 20/86 (23%), Positives = 31/86 (36%)

Query: 2   CSRSRSSASKPELMENEVHANGGKSLRRHRSASWPPSASKFNPSEFWIERMLRISRSISV 61
           CSR RS   K +   +++H    K LR   S      + +     +  ER  R  R  S 
Sbjct: 253 CSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 312

Query: 62  ESCPEPSEHNDSYAKMASTAFVVEQV 87
           E   +      S       +  +EQ+
Sbjct: 313 ERSRDRRGRGRSREHRIIPSHYIEQI 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 112 LRSVLLTKDVEDRKKP 127
           L S+LLTK  EDR  P
Sbjct: 658 LTSLLLTKVAEDRPLP 673


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.125    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,336
Number of Sequences: 429
Number of extensions: 2678
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 290
length of database: 140,377
effective HSP length: 57
effective length of query: 233
effective length of database: 115,924
effective search space: 27010292
effective search space used: 27010292
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)