GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004810-TA|BGIBMGA004810-PA|IPR002220|Dihydrodipicolinate
synthetase
         (293 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 82  PDVIEMAQFAEDVEVDAIMTLPELYYKPRNVEQLVSYLETVSKAAPTLPLIYYHFPMMSG 141
           P+  E  +F++  +   I  L +   KP     LVS+L+  S     L ++  H  +++ 
Sbjct: 527 PERAEFIEFSKPFKYQGITILEK---KPSRSSTLVSFLQPFSNTLWILVMVSVH--VVAL 581

Query: 142 VDLNMKRFFALASSRIPNFMGMKAD-LNVAVQV 173
           V   + RF      ++ N  G + D LN++  V
Sbjct: 582 VLYLLDRFSPFGRFKLANTDGTEEDALNLSSAV 614


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 10   SVIADYLSFLKRKNINGILVPFGILTQPTV---GGTTGETASLSLQERKDVLNAWLQSAR 66
            +++A  +  +    I  +L   G+  Q        ++ ++  +  Q+ K V+    QS +
Sbjct: 1019 TLLASQIKLVSPGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQIQQQQLKRVVTNQQQSIQ 1078

Query: 67   RHKI-KVIAQIGGIPLPDVIEMA 88
               + ++IAQIGG P+   I+ +
Sbjct: 1079 TSGMQRIIAQIGGKPIAVQIQQS 1101


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 99  IMTLPELYYKPRNVEQLVSYLETVSKAAPTL 129
           I  + EL     +V+QLVS   T+S+  P L
Sbjct: 84  IKAVMELLIDENSVKQLVSDCSTISEENPHL 114


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 224 DVNTARKLQETLNRAVDNITEQGEFLPCMK 253
           D  T +K    + R+VD + E G+  P  K
Sbjct: 235 DGGTVKKKVNYVYRSVDQVLEDGKLKPNKK 264


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,665
Number of Sequences: 429
Number of extensions: 3035
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 293
length of database: 140,377
effective HSP length: 57
effective length of query: 236
effective length of database: 115,924
effective search space: 27358064
effective search space used: 27358064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)