GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004809-TA|BGIBMGA004809-PA|IPR002220|Dihydrodipicolinate
synthetase
         (154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.037
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.80 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 28.3 bits (60), Expect = 0.037
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 106 VIPGLKAAAEIVTGYKFGDPRQPLQPVS--QEDKND---IKTILEENGCRISA 153
           V PG++      +G    +   PL PV     DK+    + T++EE  CR SA
Sbjct: 420 VAPGMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSA 472


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 96   LTNKIIAKGGVIPGLKAAAEIVTGYK 121
            LT++ I    + P L AA  ++TGYK
Sbjct: 1093 LTSQTIRISWMSPPLSAANGVITGYK 1118


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 11 RIPQFKGLKTKLEVALNVKSSNNLREDQNIYISD 44
          R P+F G  T +   + V S +++ E+   Y++D
Sbjct: 21 RAPKFLGQPTIVYFHVTVLSIDSINEESMTYVAD 54


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 14  QFKGLKTKLEVALNVKSSNNLREDQNIYISD 44
           QFK     + +A++V+ + +  +D   YI+D
Sbjct: 172 QFKESSLFVTIAVDVRDTEDKCKDTFAYIAD 202


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,618
Number of Sequences: 429
Number of extensions: 1338
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 140,377
effective HSP length: 53
effective length of query: 101
effective length of database: 117,640
effective search space: 11881640
effective search space used: 11881640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)