GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004807-TA|BGIBMGA004807-PA|IPR006186|Serine/threonine-
specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase,
IPR011236|Protein phosphatase 5, IPR001440|Tetratricopeptide TPR_1,
IPR013235|Serine/threonine phosphatase, PPP5,
IPR004843|Metallophosphoesterase, IPR013026|Tetratricopeptide region
         (490 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            27   0.35 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   7.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 224 DDKKFTMCGDIHGQFYDLMNIFKLNGLPSDENPYLFNGDFVDRGSFSV 271
           D  K     D+   +  + N+ + +G P+D  PY+F  + +D G+ ++
Sbjct: 207 DAAKHMWPSDLRTIYSRVRNLNRTHGFPNDAQPYIFQ-EVIDYGNEAI 253


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 203 ILLDVKTYLQNQPSLVDIKVPDDKKFTMCG 232
           +L+     +   P+L D +VP DKKF   G
Sbjct: 530 VLVGTAGIILQAPTLYDDRVPIDKKFNEFG 559


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 203 ILLDVKTYLQNQPSLVDIKVPDDKKFTMCG 232
           +L+     +   P+L D +VP DKKF   G
Sbjct: 530 VLVGTAGIILQAPTLYDDRVPIDKKFNEFG 559


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 116 VRPYDQDAKLKYSECNKIVK--KIAFEK 141
           +RPY   +  KY +C+ IV   KIA +K
Sbjct: 110 LRPYPDWSFAKYEDCSGIVSAFKIAVDK 137


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 410  KLDYIIRSHEVKNDGYEVAHDGKCITVFSAP 440
            KLD   R  EV N G +   D K +T  SAP
Sbjct: 1419 KLDRSSREREVHNGGQQEDRDRKTLT--SAP 1447


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)

Query: 412 DYIIRSHEVKNDGYEVAHDGKCITVFSAPNYCDTMGNLG 450
           D   R H     G E    G C    S+ N   T  NLG
Sbjct: 106 DQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTFANLG 144


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)

Query: 412 DYIIRSHEVKNDGYEVAHDGKCITVFSAPNYCDTMGNLG 450
           D   R H     G E    G C    S+ N   T  NLG
Sbjct: 106 DQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTFANLG 144


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,201
Number of Sequences: 429
Number of extensions: 6226
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 490
length of database: 140,377
effective HSP length: 60
effective length of query: 430
effective length of database: 114,637
effective search space: 49293910
effective search space used: 49293910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)