GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004797-TA|BGIBMGA004797-PA|IPR000834|Peptidase M14,
carboxypeptidase A, IPR003146|Proteinase inhibitor, carboxypeptidase
propeptide, IPR009020|Proteinase inhibitor, propeptide
         (383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.12 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.12 
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           26   0.62 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 188 YTQLIVIPYSHVTGS-DVLLANNYADMYEIGIRSADAIAKRYGTVYRVGVSSEILYPISG 246
           YTQL V P   + G+ D L  N Y        +S   I   +G  ++ G        I  
Sbjct: 88  YTQLPVNPRDKIEGAEDCLYLNVYVPADRTPSQSLPVIFWIHGGAFQFGSG------IPM 141

Query: 247 GSFDWVKKVADVPITFLIELRDLGEYGFLLPPEQIIPNNLETMDGLIEMDRVTKLLGYYS 306
           G+    K + D  + F+     LG  GFL   ++++P N+   D  + +  V++ + ++ 
Sbjct: 142 GA----KYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSMALRWVSENIEWFG 197

Query: 307 AVTK 310
              K
Sbjct: 198 GNPK 201


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 188 YTQLIVIPYSHVTGS-DVLLANNYADMYEIGIRSADAIAKRYGTVYRVGVSSEILYPISG 246
           YTQL V P   + G+ D L  N Y        +S   I   +G  ++ G        I  
Sbjct: 88  YTQLPVNPRDKIEGAEDCLYLNVYVPADRTPSQSLPVIFWIHGGAFQFGSG------IPM 141

Query: 247 GSFDWVKKVADVPITFLIELRDLGEYGFLLPPEQIIPNNLETMDGLIEMDRVTKLLGYYS 306
           G+    K + D  + F+     LG  GFL   ++++P N+   D  + +  V++ + ++ 
Sbjct: 142 GA----KYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSMALRWVSENIEWFG 197

Query: 307 AVTK 310
              K
Sbjct: 198 GNPK 201


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 25.8 bits (54), Expect = 0.62
 Identities = 14/71 (19%), Positives = 33/71 (46%)

Query: 240 ILYPISGGSFDWVKKVADVPITFLIELRDLGEYGFLLPPEQIIPNNLETMDGLIEMDRVT 299
           + + +  G+    K + D  + F+     LG  GFL   ++++P N+   D  + +  V+
Sbjct: 2   LAFQLGSGTPMGAKYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSMALRWVS 61

Query: 300 KLLGYYSAVTK 310
           + + ++    K
Sbjct: 62  ENIEWFGGNPK 72


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 190 QLIVIPYSHVTGSDVLLANNYADMYEI 216
           +++ +P  H+   D++L NN    YE+
Sbjct: 101 KMLHVPSDHIWRPDIVLYNNADGNYEV 127


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 194 IPYSHVTGSDVLLANNYADMYEIGIRSADAIAKRYGTV 231
           +P  H+   D++L NN    YE+ I +  AI    G V
Sbjct: 97  VPSEHIWLPDIVLYNNADGNYEVTIMT-KAILHHTGKV 133


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 190 QLIVIPYSHVTGSDVLLANNYADMYEIGIRSADAI 224
           +++ +P  H+   D++L NN    +E+ + +   I
Sbjct: 101 KMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATI 135


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 190 QLIVIPYSHVTGSDVLLANNYADMYEI 216
           +++ +P  H+   D++L NN    +E+
Sbjct: 97  EMLHVPSDHIWRPDIVLYNNADGNFEV 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,617
Number of Sequences: 429
Number of extensions: 5080
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 383
length of database: 140,377
effective HSP length: 59
effective length of query: 324
effective length of database: 115,066
effective search space: 37281384
effective search space used: 37281384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)