GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004795-TA|BGIBMGA004795-PA|IPR004837|Sodium/calcium
exchanger membrane region
         (303 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.36 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.36 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 96  DPDEPPSCFDYVLHVVTLFWKIIFALIPPTDIG----GGYVCFVVSIICIGLVTAV 147
           D  E  S    +L  +T+F+ ++  +IPPT +     G Y+ F + ++ + +V  +
Sbjct: 263 DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTI 318


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 96  DPDEPPSCFDYVLHVVTLFWKIIFALIPPTDIG----GGYVCFVVSIICIGL-VTAVIGD 150
           D  E  S    +L  +T+F+ ++  +IPPT +     G Y+ F + ++ + + +T  + +
Sbjct: 276 DSGEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVCVLN 335

Query: 151 VASHF 155
           V  HF
Sbjct: 336 V--HF 338


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 96  DPDEPPSCFDYVLHVVTLFWKIIFALIPPTDIG----GGYVCFVVSIICIGL-VTAVIGD 150
           D  E  S    +L  +T+F+ ++  +IPPT +     G +V F + +    + VT V+ +
Sbjct: 267 DSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLN 326

Query: 151 VASHF 155
           V  HF
Sbjct: 327 V--HF 329


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,608
Number of Sequences: 429
Number of extensions: 2649
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 303
length of database: 140,377
effective HSP length: 57
effective length of query: 246
effective length of database: 115,924
effective search space: 28517304
effective search space used: 28517304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)