GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004794-TA|BGIBMGA004794-PA|IPR004836|Sodium/calcium
exchanger protein, IPR004837|Sodium/calcium exchanger membrane region,
IPR003644|Na-Ca exchanger/integrin-beta4
         (554 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.54 

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 48  LEDVPTYQIAIRGF----VYFLALMYLFIGVSIVSDRFMAAIE-VITSREKEVRVRRNGS 102
           + + P YQ++   F    + F+A++Y+ IG+ I SD     +E  +    K+V+ R+  +
Sbjct: 200 MPEFPLYQLSCILFFLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTIT 259

Query: 103 EQIIVV 108
             +  V
Sbjct: 260 RMLSAV 265


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,195
Number of Sequences: 429
Number of extensions: 5739
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 1
length of query: 554
length of database: 140,377
effective HSP length: 61
effective length of query: 493
effective length of database: 114,208
effective search space: 56304544
effective search space used: 56304544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)