GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004793-TA|BGIBMGA004793-PA|undefined
         (88 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   2.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   3.0  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    21   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   4.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   5.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   9.1  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 36  NGTFNATV-LTRKENTVDLKGDSGVPQITEIF 66
           NG+  A +  + +E  VDLK  + VP+   +F
Sbjct: 499 NGSLYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 36  NGTFNATV-LTRKENTVDLKGDSGVPQITEIF 66
           NG+  A +  + +E  VDLK  + VP+   +F
Sbjct: 499 NGSLYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 LLLINVSGIKCFNVTSPSI 30
          LLL+   GI C +VTS ++
Sbjct: 5  LLLVVCLGIACQDVTSAAV 23


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
          protein MRJP3 protein.
          Length = 31

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 LLLINVSGIKCFNVTSPSI 30
          LLL+   GI C +VTS ++
Sbjct: 5  LLLVVCLGIACQDVTSAAV 23


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 28  PSIEGVIFNGTFNATVLTRKENTV 51
           P+  G+ F  TFN   LT+   TV
Sbjct: 929 PTETGLPFVYTFNVIKLTKTSGTV 952



 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 24   NVTSPSIEGVIFNGTFNATVLTRKE 48
            N+     + VIF+ +F++ V+TR +
Sbjct: 1124 NLEGEQKDPVIFSTSFDSKVMTRPD 1148


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 10 TVLLLINVSGIKCFNVTSPSI 30
          T LLL+   GI C  +TS ++
Sbjct: 3  TWLLLVVCLGIACQGITSVTV 23


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 23 FNVTSPSIEGVIFNGTFNATVLTRKE 48
          F  T     G+ FNG      LT+K+
Sbjct: 70 FTTTFRPTAGMTFNGGVGPNGLTKKQ 95


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 68  GDGCPTGYGRAQDNTCQLII 87
           GDG P G G  ++    L++
Sbjct: 143 GDGSPGGNGGPRNGLLPLLV 162


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 68  GDGCPTGYGRAQDNTCQLII 87
           GDG P G G  ++    L++
Sbjct: 143 GDGSPGGNGGPRNGLLPLLV 162


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,271
Number of Sequences: 429
Number of extensions: 1075
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 88
length of database: 140,377
effective HSP length: 48
effective length of query: 40
effective length of database: 119,785
effective search space:  4791400
effective search space used:  4791400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)