GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 192  RKTVKNLHEVE-------LVKIDAALQRKLNQIRYANENFMKNSTFR 231
            RKTV NL +         +  +D A QR++ QI   + N    S FR
Sbjct: 1369 RKTVSNLAQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 192  RKTVKNLHEVE-------LVKIDAALQRKLNQIRYANENFMKNSTFR 231
            RKTV NL +         +  +D A QR++ QI   + N    S FR
Sbjct: 1369 RKTVSNLAQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 3    DWKEEYAEYWLAKKLEALNTT-MVPGDSVNMVAARPWGVSCGD 44
            DW E    +  A    A +TT MVP   V    +RP G    D
Sbjct: 2277 DWPENTECHPDASSTMAPSTTPMVPDKPVTTTTSRPIGTDTSD 2319


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,038
Number of Sequences: 317
Number of extensions: 1954
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 114,650
effective HSP length: 56
effective length of query: 230
effective length of database: 96,898
effective search space: 22286540
effective search space used: 22286540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)