GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    29   0.76 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    28   1.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   2.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   3.1  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   4.1  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    27   4.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   7.1  

>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 201 VELVKIDAALQRKLNQIRYANENFMKNSTFRDIVINGTMN 240
           +ELVKI   L R   ++  A  N + +STF+DIV    +N
Sbjct: 547 LELVKIADKLLRVAKEVCSAKNNDVTDSTFKDIVEGFELN 586


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 4   WKEEYAEYWLAKKLEALNTTMVPGDSVNMVAARPW 38
           +K  Y  YWL   L  +N    P  +VN++ A  W
Sbjct: 332 FKANYRRYWLQYSLNQINILRDPLKAVNVLKAIRW 366


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 198 LHEVELVKIDAALQRKLNQIRYANENFMKNSTFRDIVINGTMNKSGARMLVEAYPELSSY 257
           LHE  +VK+ AAL+  ++Q       F     +  ++++ TMN    + L  +  E S  
Sbjct: 479 LHEYAVVKLYAALKEDVSQEALTLSAFWVIGEYGQMLLSPTMNFDDDQTLPHSVSE-SDI 537

Query: 258 IDATRRSGASYVPKDYVEYDIEYGL 282
           +D       S     Y+   ++YGL
Sbjct: 538 VDIIEEVFNSVEASRYI--IVQYGL 560


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 202 ELVKIDAALQRKLNQIRYANENFMKNSTFRD 232
           EL+ I + L+ KL Q++Y++EN +K  T  D
Sbjct: 394 ELIAISSVLRTKLYQLQYSDEN-VKVETVED 423


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 196 KNLHEVELVKIDAA---LQRKLNQIRYANENF 224
           K +HE ELVKI+ +   ++++L  I+ AN NF
Sbjct: 67  KKMHENELVKIEGSRNNIEQQLFSIQNANLNF 98


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 4   WKEEYAEYWLAKKLEALNTTMVPGDSVNMVAARPW 38
           +K  Y +YWL   LE +     P  ++N++ A  W
Sbjct: 332 FKSYYRKYWLNYMLEEIRLGKNPSKTMNVLKAVRW 366


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 181 VSDLKKQYKKDRKTVKNLHEVELVKIDA---ALQRKLNQI---RYANENFMKNSTFRDIV 234
           V DL   +++  +    L   +  +ID     L  KL  I    Y NE+   +S  R   
Sbjct: 463 VYDLLLDFEQALRKASTLETTDQEQIDTWKTTLSEKLESIWKALYINESLEASSKTRPPF 522

Query: 235 INGTMNKSGARMLVEAYPELS 255
           I+   +  G R+L   +P LS
Sbjct: 523 ISIISHPKGMRLLPRLFPHLS 543


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,919
Number of Sequences: 5004
Number of extensions: 38603
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 7
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)