GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   5.7  
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    28   9.9  

>08_02_0864 +
          21994286-21994989,21996257-21996958,21997221-21997374,
          21997494-21997838,21998323-21999240,21999312-21999640,
          21999709-21999832,21999901-22000071,22000188-22001648,
          22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 12 WLAKKLEALNTTMVPGDSVNMVAARPWGVSCGDPNQHD------MPWGTCMLPMECDAEY 65
          W+ ++ +      +P    + V A   G     P  HD      MP  +C +  +CDA++
Sbjct: 19 WMPRRGDHSPPPPLPPPPASQVGAGGGG-GAASPQPHDLSRDFWMPDQSCRVCYDCDAQF 77

Query: 66 RIYRGDHFCGRTEFVCCS 83
           I    H C     V C+
Sbjct: 78 TILNRRHHCRHCGRVFCA 95


>03_03_0266 -
          16014740-16015045,16015566-16015601,16015623-16015643,
          16016331-16016591,16017504-16018985,16019834-16019989,
          16020154-16020277,16020399-16020615,16020877-16021774,
          16022947-16023291,16023371-16023565,16023751-16024453,
          16024866-16025467
          Length = 1781

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 50 MPWGTCMLPMECDAEYRIYRGDHFCGRTEFVCC 82
          MP  +C +  +CD ++ I+   H C R   + C
Sbjct: 34 MPDHSCRVCYDCDTQFTIFNRRHHCRRCGRIFC 66


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,364,343
Number of Sequences: 37544
Number of extensions: 230248
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 2
length of query: 286
length of database: 14,793,348
effective HSP length: 81
effective length of query: 205
effective length of database: 11,752,284
effective search space: 2409218220
effective search space used: 2409218220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)