GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    25   3.3  
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    24   5.7  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    23   7.6  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 180 FVSDLKKQYKKDRKTVKNLHEVELVKIDAALQRKLNQIRYAN 221
           F+S LKK YKK  K  +N      V   A L+R  N   YAN
Sbjct: 24  FISKLKKSYKKASKAEEN-EAPRKVSHKAQLERFKN---YAN 61


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
          protease protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 42 CGDPNQHDMPWGTCMLPMECDAEYRI 67
          C  PN+ +   G CMLP EC A  +I
Sbjct: 41 CDIPNEPNP--GQCMLPAECVAYGKI 64


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 54  TCMLPMECDAEYRIYRGDHFCGRTEFVCCSLQLSAFDM 91
           TC+LP+E D E R+   D +   TE  C  +   A D+
Sbjct: 461 TCLLPLEDDKEQRL-EADRYNFVTE--CFFMTHKAIDL 495


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,418
Number of Sequences: 2123
Number of extensions: 8244
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 516,269
effective HSP length: 63
effective length of query: 223
effective length of database: 382,520
effective search space: 85301960
effective search space used: 85301960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)