GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109046-1|AAI09047.1|  953|Homo sapiens ZNF518 protein protein.       33   1.1  
BC109045-1|AAI09046.1|  953|Homo sapiens ZNF518 protein protein.       33   1.1  
AB002333-1|BAA20793.2| 1484|Homo sapiens KIAA0335 protein.             33   1.1  

>BC109046-1|AAI09047.1|  953|Homo sapiens ZNF518 protein protein.
          Length = 953

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 18  EALNTTMVPGDSVNMVAARPWGVSCGDPNQHDMPWGTCMLPME 60
           E L TT+   D VN VA +P   + GD + + + +G C LP+E
Sbjct: 59  EVLGTTIKSPDKVNCVA-KPNAYNSGDMHNYCINYGNCELPVE 100


>BC109045-1|AAI09046.1|  953|Homo sapiens ZNF518 protein protein.
          Length = 953

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 18  EALNTTMVPGDSVNMVAARPWGVSCGDPNQHDMPWGTCMLPME 60
           E L TT+   D VN VA +P   + GD + + + +G C LP+E
Sbjct: 59  EVLGTTIKSPDKVNCVA-KPNAYNSGDMHNYCINYGNCELPVE 100


>AB002333-1|BAA20793.2| 1484|Homo sapiens KIAA0335 protein.
          Length = 1484

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 18  EALNTTMVPGDSVNMVAARPWGVSCGDPNQHDMPWGTCMLPME 60
           E L TT+   D VN VA +P   + GD + + + +G C LP+E
Sbjct: 590 EVLGTTIKSPDKVNCVA-KPNAYNSGDMHNYCINYGNCELPVE 631


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,629,830
Number of Sequences: 224733
Number of extensions: 1124114
Number of successful extensions: 2214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2214
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 73,234,838
effective HSP length: 89
effective length of query: 197
effective length of database: 53,233,601
effective search space: 10487019397
effective search space used: 10487019397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)