GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p pro...    33   0.45 
AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9 signalo...    33   0.45 
AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA...    33   0.45 
BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p pro...    29   9.7  
AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule ...    29   9.7  
AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA...    29   9.7  

>AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p
           protein.
          Length = 525

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 182 SDLKKQYKKDRKTVKNL-HEVELVKIDAALQRKL---NQIRYANENFMKNSTFRDIVING 237
           +D+ K       +V +L +EV  + +D  +Q ++   N+I +A E   +NSTF   +I G
Sbjct: 413 ADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472

Query: 238 TMNKSGARMLVEAYPELSSYI 258
              +   RMLV     L S+I
Sbjct: 473 KQYQRHTRMLVLRAAMLKSHI 493


>AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9
           signalosome subunit 1 CSN1 protein.
          Length = 525

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 182 SDLKKQYKKDRKTVKNL-HEVELVKIDAALQRKL---NQIRYANENFMKNSTFRDIVING 237
           +D+ K       +V +L +EV  + +D  +Q ++   N+I +A E   +NSTF   +I G
Sbjct: 413 ADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472

Query: 238 TMNKSGARMLVEAYPELSSYI 258
              +   RMLV     L S+I
Sbjct: 473 KQYQRHTRMLVLRAAMLKSHI 493


>AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA
           protein.
          Length = 525

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 182 SDLKKQYKKDRKTVKNL-HEVELVKIDAALQRKL---NQIRYANENFMKNSTFRDIVING 237
           +D+ K       +V +L +EV  + +D  +Q ++   N+I +A E   +NSTF   +I G
Sbjct: 413 ADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472

Query: 238 TMNKSGARMLVEAYPELSSYI 258
              +   RMLV     L S+I
Sbjct: 473 KQYQRHTRMLVLRAAMLKSHI 493


>BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p
           protein.
          Length = 2042

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 210 LQRKLNQIRYANENFMKNSTFRDIVINGTMNK-SGARMLVEAYPELSSYIDATR 262
           L+ KL+ IR   EN+   +T  D+VIN  + K + A+    A   LS++ +AT+
Sbjct: 653 LKFKLDIIRSVAENYPLTTTTVDLVINEIIEKLADAKNGAAAADVLSAFAEATK 706


>AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule
           associated protein protein.
          Length = 2050

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 210 LQRKLNQIRYANENFMKNSTFRDIVINGTMNK-SGARMLVEAYPELSSYIDATR 262
           L+ KL+ IR   EN+   +T  D+VIN  + K + A+    A   LS++ +AT+
Sbjct: 652 LKFKLDIIRSVAENYPLTTTTVDLVINEIIEKLADAKNGAAAADVLSAFAEATK 705


>AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA
           protein.
          Length = 2049

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 210 LQRKLNQIRYANENFMKNSTFRDIVINGTMNK-SGARMLVEAYPELSSYIDATR 262
           L+ KL+ IR   EN+   +T  D+VIN  + K + A+    A   LS++ +AT+
Sbjct: 653 LKFKLDIIRSVAENYPLTTTTVDLVINEIIEKLADAKNGAAAADVLSAFAEATK 706


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,770
Number of Sequences: 52641
Number of extensions: 403820
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 6
length of query: 286
length of database: 24,830,863
effective HSP length: 84
effective length of query: 202
effective length of database: 20,409,019
effective search space: 4122621838
effective search space used: 4122621838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)