GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004792-TA|BGIBMGA004792-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH
         (286 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42439-4|AAA83508.1|  582|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.       29   5.0  
AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation...    29   5.0  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U42439-4|AAA83508.1|  582|Caenorhabditis elegans Hypothetical
           protein F19C7.2 protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 201 VELVKIDAALQRKLNQIRYANENFMKNSTFRDIVINGTMNKSGARMLVEAYPELSSYIDA 260
           ++L+ ID AL      I   N  + K+     +   G+   S +    E YPE+++   A
Sbjct: 148 MKLLTIDQALADIKEFITQMNALYFKDDKPIWVTFGGSYPGSLSAFFRETYPEMTA--GA 205

Query: 261 TRRSGASYVPKDYVEYDIEYGLNY 284
              S A +V  DY EY I     Y
Sbjct: 206 VSSSSAVHVFVDYYEYAINTEKTY 229


>AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 1   MKDWKEEYAEYWLAKKLEALNTTMVPGDSVNMVAAR 36
           +K W ++Y++Y+L ++ +A N    PGD    +A R
Sbjct: 414 VKTWMDDYSKYYLTREPQATNVN--PGDISAQLALR 447


>AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation
           related protein 7 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 1   MKDWKEEYAEYWLAKKLEALNTTMVPGDSVNMVAAR 36
           +K W ++Y++Y+L ++ +A N    PGD    +A R
Sbjct: 414 VKTWMDDYSKYYLTREPQATNVN--PGDISAQLALR 447


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 180 FVSDLKKQYKKDRKTVKNL 198
           FV DLK+QY +DR+ +K +
Sbjct: 499 FVEDLKEQYTEDRRLIKEI 517


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,701,150
Number of Sequences: 27539
Number of extensions: 213456
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 4
length of query: 286
length of database: 12,573,161
effective HSP length: 81
effective length of query: 205
effective length of database: 10,342,502
effective search space: 2120212910
effective search space used: 2120212910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)