GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004791-TA|BGIBMGA004791-PA|IPR012278|Mg-dependent DNase,
TatD, IPR001130|TatD-related deoxyribonuclease
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 94  VQREVFKRQVEMACDLRKPLFVHEKEAQEDLIKILDEFGARLPPVVIHSF 143
           + +EV   Q   AC L K LF +     +++ KI+     ++   +I  F
Sbjct: 32  ILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMF 81


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 94  VQREVFKRQVEMACDLRKPLFVHEKEAQEDLIKILDEFGARLPPVVIHSF 143
           + +EV   Q   AC L K LF +     +++ KI+     ++   +I  F
Sbjct: 15  ILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMF 64


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 147 VEQGIRYIEKGYYLGITG-YICKDKSDGGIRRLLSERIL 184
           +  G + I K      TG Y+C+  S GGI R +S  ++
Sbjct: 453 IGNGTKLIIKNVDYADTGAYMCQASSIGGITRDISSLVV 491


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 141 HSFTGTVEQGIRYIEK 156
           +SF G +   +RY+EK
Sbjct: 6   YSFYGNISDELRYLEK 21


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,226
Number of Sequences: 429
Number of extensions: 3271
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)