GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004785-TA|BGIBMGA004785-PA|IPR011000|Apolipophorin
III-like, IPR006597|Sel1-like
         (524 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   6.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 173 VDASILQIKQAAEVGYVPAKIKLAWSYLYGEGVEIDFEKAKSIFEELAAEGNADAHAGM 231
           +DA + Q+++   + ++ A+  +A     G+ + I +E+   +F+EL  + +   +AGM
Sbjct: 357 IDAIMTQLREEGWIHHL-ARHAVACFLTRGD-LWISWEEGMKVFDELLLDADWSVNAGM 413


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 53  IKELTDAMNKEILTLQEYADAMKS-QSSKDETNKESHLEQMAYTXXXXXXXXXXHS-EPT 110
           +  L D  N+  LTLQE ADA K  Q    E  K   L ++A +           S  P 
Sbjct: 379 VDRLMDETNQ--LTLQETADAFKDLQDKYYEEYKMYELGELASSFVGPKVKDCLISWNPL 436

Query: 111 WLPNQKAELSVNEKSLEEN 129
             P Q  +L    KS+ E+
Sbjct: 437 MQPKQPIKLFEQWKSILES 455


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,848
Number of Sequences: 429
Number of extensions: 4041
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 524
length of database: 140,377
effective HSP length: 61
effective length of query: 463
effective length of database: 114,208
effective search space: 52878304
effective search space used: 52878304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)