GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004784-TA|BGIBMGA004784-PA|IPR010655|Pre-mRNA cleavage
complex II Clp1
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.37 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 262 KRDMPKFVKVVYLPKSGGVVERS 284
           KR +P F+K  Y P+S G VE S
Sbjct: 265 KRTLPHFIKDDYGPESRGFVENS 287


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 108 RGPVTMIVGPADVGKSTLSRILLNYAV 134
           R P+  I+G  D GK+TL   L N ++
Sbjct: 144 RHPIVTIMGHVDHGKTTLLDALRNTSI 170


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 76  VSYVAKETPMIVYLNVHAALEQQRVAAEQENTRGPVTMIVGPADVGKSTLSR 127
           VS  A+++  ++YL     + Q+  AA+ +   G +   + P  V    LSR
Sbjct: 721 VSRYAEKSRRMLYLRGREVVAQRERAADMKRRNGALIYNILPPHVAAYFLSR 772


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 216 AASSGVIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKR-DMPKFVK 270
           AA   V  N+ G + +   +V    AQA++VDV ++    R    + R  +P FVK
Sbjct: 104 AAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVK 159



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 352 GGRALQHRLLAVSFAAEPDDHVLHSNLAG 380
           GG      L   SF  EP   V  SN +G
Sbjct: 19  GGHGFDAHLRGPSFVMEPPSRVEFSNSSG 47


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 216 AASSGVIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKR-DMPKFVK 270
           AA   V  N+ G + +   +V    AQA++VDV ++    R    + R  +P FVK
Sbjct: 104 AAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVK 159



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 352 GGRALQHRLLAVSFAAEPDDHVLHSNLAG 380
           GG      L   SF  EP   V  SN +G
Sbjct: 19  GGHGFDAHLRGPSFVMEPPSRVEFSNSSG 47


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,296
Number of Sequences: 429
Number of extensions: 4458
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)