GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004783-TA|BGIBMGA004783-PA|IPR004344|Tubulin-tyrosine
ligase
         (914 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   4.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 101 GNSNKYTGQAIVVRHVSEAELPKTESVAEQG 131
           GN N Y+G+ I +RH+ E E+   E+  E G
Sbjct: 627 GNENIYSGKLISMRHLKE-EVSSIETNYECG 656


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 41  SCVLASRTPSMESTTKTVGNNTGTSILLNKAKNMARR 77
           SCV+ASR  ++E+ T++       ++L+ +AK++  R
Sbjct: 222 SCVIASRHRNLEA-TESENVRPRRNVLIERAKSIRAR 257


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,485
Number of Sequences: 429
Number of extensions: 10517
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 914
length of database: 140,377
effective HSP length: 64
effective length of query: 850
effective length of database: 112,921
effective search space: 95982850
effective search space used: 95982850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)