GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004782-TA|BGIBMGA004782-PA|IPR005937|26S proteasome
subunit P45, IPR003959|AAA ATPase, central region,
IPR003960|AAA-protein subdomain, IPR003593|AAA ATPase
         (428 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.93 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.93 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.93 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   2.8  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 15  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 65
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 66  TEKIKVNKTLPYLVSNVIELLD 87
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 15  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 65
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 66  TEKIKVNKTLPYLVSNVIELLD 87
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 15  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 65
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 66  TEKIKVNKTLPYLVSNVIELLD 87
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 110 CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLV 140
           C V+  ST   Y + V+GL  A    P D++
Sbjct: 154 CVVLACSTATVYVMSVVGLSKAPAQIPVDVL 184


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 61  KIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDS 104
           +IK+  E ++ +     L + + + +  + +EEEE+   +DLDS
Sbjct: 291 EIKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDS 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 48  VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSN 81
           + R + E+ AQND+  +    +K+ + LP+ V +
Sbjct: 334 LQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGS 367


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,667
Number of Sequences: 429
Number of extensions: 4365
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 6
length of query: 428
length of database: 140,377
effective HSP length: 60
effective length of query: 368
effective length of database: 114,637
effective search space: 42186416
effective search space used: 42186416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)