GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004773-TA|BGIBMGA004773-PA|IPR007858|Dpy-30
         (180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   0.99 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   0.99 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   1.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   1.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 71  WKNMGNNYKERKQYLNM 87
           +KN  NNY  +K Y N+
Sbjct: 311 YKNYNNNYNSKKLYYNI 327


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 71  WKNMGNNYKERKQYLNM 87
           +KN  NNY  +K Y N+
Sbjct: 322 YKNYNNNYNSKKLYYNI 338


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 67  KLECWKNMGNNYKERKQYLNMKIADAAKAL 96
           K E W ++ N Y   K+Y  +K  + AK L
Sbjct: 98  KPELWDSLANKYDPDKKY-RVKFEEEAKKL 126


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 67  KLECWKNMGNNYKERKQYLNMKIADAAKAL 96
           K E W ++ N Y   K+Y  +K  + AK L
Sbjct: 98  KPELWDSLANKYDPDKKY-RVKFEEEAKKL 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,225
Number of Sequences: 429
Number of extensions: 2940
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 140,377
effective HSP length: 54
effective length of query: 126
effective length of database: 117,211
effective search space: 14768586
effective search space used: 14768586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)